Kuqi came in for a barracking from the fans when he was substituted in the second half on Saturday, and reacted by making obscene gestures at sections of the crowd.
Although he later apologised, Palace boss Neil Warnock wasted no time in disciplining the forward.
Warnock said: "I have had a word with him and he has said he is sorry to me and the fans.
"But I will be fining him two weeks' wages and transfer-listing him. I don't put up with that. You cannot gesture. It is disappointing to see, even though he had been provoked."
Kuqi cost Palace £2.5m from Blackburn in the summer of 2006 but has scored just eight goals in 46 appearances.